D3N

1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-perimidin-2(3H)-one

Created:2012-11-02
Last modified:  2013-06-12

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Chemical Details

Formal Charge0
Atom Count43
Chiral Atom Count3
Bond Count46
Aromatic Bond Count11
2D diagram of D3N

Chemical Component Summary

Name1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1H-perimidin-2(3H)-one
Systematic Name (OpenEye OEToolkits)[(2R,3S,5R)-3-oxidanyl-5-(2-oxidanylidene-3H-perimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate
FormulaC16 H17 N2 O7 P
Molecular Weight380.289
TypeDNA LINKING

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs12.01O=P(O)(O)OCC4OC(N1C(=O)Nc3c2c1cccc2ccc3)CC4O
SMILESCACTVS3.370O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C(=O)Nc3cccc4cccc2c34
SMILESOpenEye OEToolkits1.7.6c1cc2cccc3c2c(c1)NC(=O)N3C4CC(C(O4)COP(=O)(O)O)O
Canonical SMILESCACTVS3.370 O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=O)Nc3cccc4cccc2c34
Canonical SMILESOpenEye OEToolkits1.7.6 c1cc2cccc3c2c(c1)NC(=O)N3[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O
InChIInChI1.03 InChI=1S/C16H17N2O7P/c19-12-7-14(25-13(12)8-24-26(21,22)23)18-11-6-2-4-9-3-1-5-10(15(9)11)17-16(18)20/h1-6,12-14,19H,7-8H2,(H,17,20)(H2,21,22,23)/t12-,13+,14+/m0/s1
InChIKeyInChI1.03 SQPAXPCPGSJUFJ-BFHYXJOUSA-N

Related Resource References

Resource NameReference
PubChem 137349152