A1ER6

adenosylcobinamide-GDP

Created:	2025-06-20
Last modified:	2025-10-08

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1 entries where A1ER6 is found as a standalone ligand

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Chemical Details
Formal Charge	2
Atom Count	206
Chiral Atom Count	21
Bond Count	219
Aromatic Bond Count	15

2D diagram of A1ER6

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Chemical Component Summary
Name	adenosylcobinamide-GDP
Formula	C₆₈ H₉₃ Co N₂₁ O₂₁ P₂
Molecular Weight	1,661.475
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	CACTVS	3.385	C[CH](CNC(=O)CC[C]1(C)[CH](CC(N)=O)[CH]2[N]3C1=C(C)C4=NC(=CC5=[N+]6C(=C(C)C7=[N+]([C]2(C)[C](C)(CC(N)=O)[CH]7CCC(N)=O)[Co]36C[CH]8O[CH]([CH](O)[CH]8O)n9cnc%10c(N)ncnc9%10)[C](C)(CC(N)=O)[CH]5C=CC(N)=O)C(C)(C)[CH]4C=CC(N)=O)O[P](O)(=O)O[P](O)(=O)OC[CH]%11O[CH]([CH](O)[CH]%11O)n%12cnc%13C(=O)NC(=Nc%12%13)N
SMILES	OpenEye OEToolkits	2.0.7	CC1=C2C(C(C3=[N+]2[Co]45(N6C(C(C(C6=C(C7=[N]4C(=C3)C(C7C=CC(=O)N)(C)C)C)(C)CCC(=O)NCC(C)OP(=O)(O)OP(=O)(O)OCC8C(C(C(O8)n9cnc2c9N=C(NC2=O)N)O)O)CC(=O)N)C2([N+]5=C1C(C2(C)CC(=O)N)CCC(=O)N)C)CC1C(C(C(O1)n1cnc2c1ncnc2N)O)O)C=CC(=O)N)(C)CC(=O)N
Canonical SMILES	CACTVS	3.385	C[C@H](CNC(=O)CC[C@]1(C)[C@@H](CC(N)=O)[C@H]2[N@@]3C1=C(C)C4=NC(=CC5=[N@@+]6C(=C(C)C7=[N@@+]([C@]2(C)[C@@](C)(CC(N)=O)[C@@H]7CCC(N)=O)[Co]36C[C@H]8O[C@H]([C@H](O)[C@@H]8O)n9cnc%10c(N)ncnc9%10)[C@@](C)(CC(N)=O)[C@@H]5/C=C/C(N)=O)C(C)(C)[C@@H]4\C=C\C(N)=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]%11O[C@H]([C@H](O)[C@@H]%11O)n%12cnc%13C(=O)NC(=Nc%12%13)N
Canonical SMILES	OpenEye OEToolkits	2.0.7	CC1=C2[C@@]([C@@H](C3=[N+]2[Co]45(N6[C@H]([C@@H]([C@@](C6=C(C7=[N]4C(=C3)C([C@@H]7/C=C/C(=O)N)(C)C)C)(C)CCC(=O)NC[C@@H](C)OP(=O)(O)OP(=O)(O)OC[C@@H]8[C@H]([C@H]([C@@H](O8)n9cnc2c9N=C(NC2=O)N)O)O)CC(=O)N)[C@@]2([N+]5=C1[C@H]([C@]2(C)CC(=O)N)CCC(=O)N)C)C[C@@H]1[C@H]([C@H]([C@@H](O1)n1cnc2c1ncnc2N)O)O)/C=C/C(=O)N)(C)CC(=O)N
InChI	InChI	1.06	InChI=1S/C58H82N16O18P2.C10H12N5O3.Co/c1-25(91-94(87,88)92-93(85,86)89-23-33-45(82)46(83)52(90-33)74-24-67-44-50(74)71-53(65)72-51(44)84)22-66-41(81)16-17-55(6)31(18-38(62)78)49-58(9)57(8,21-40(64)80)30(12-15-37(61)77)43(73-58)27(3)48-56(7,20-39(63)79)28(10-13-35(59)75)32(68-48)19-34-54(4,5)29(11-14-36(60)76)42(69-34)26(2)47(55)70-49;1-4-6(16)7(17)10(18-4)15-3-14-5-8(11)12-2-13-9(5)15;/h10-11,13-14,19,24-25,28-31,33,45-46,49,52,82-83H,12,15-18,20-23H2,1-9H3,(H19,59,60,61,62,63,64,65,66,68,69,70,71,72,73,75,76,77,78,79,80,81,84,85,86,87,88);2-4,6-7,10,16-17H,1H2,(H2,11,12,13);/q;;+3/p-1/b13-10+,14-11+;;/t25-,28-,29-,30-,31+,33-,45-,46-,49-,52-,55-,56+,57+,58+;4-,6-,7-,10-;/m11./s1
InChIKey	InChI	1.06	LPFRQNISNASIDF-GNORBUJHSA-M

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.