A1BIK

1-(5-amino-3,7-anhydro-5-deoxy-2-O-phosphono-D-threo-beta-D-allo-octofuranuronosyl)pyrimidine-2,4(1H,3H)-dione

Created:	2024-11-26
Last modified:	2025-08-20

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1 entries where A1BIK is found as a standalone ligand

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Chemical Details
Formal Charge	0
Atom Count	43
Chiral Atom Count	7
Bond Count	45
Aromatic Bond Count	0

2D diagram of A1BIK

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Chemical Component Summary
Name	1-(5-amino-3,7-anhydro-5-deoxy-2-O-phosphono-D-threo-beta-D-allo-octofuranuronosyl)pyrimidine-2,4(1H,3H)-dione
Systematic Name (OpenEye OEToolkits)	(2~{R},3~{R},3~{a}~{R},5~{S},6~{R},7~{R},7~{a}~{R})-7-azanyl-2-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-6-oxidanyl-3-phosphonooxy-3,3~{a},5,6,7,7~{a}-hexahydro-2~{H}-furo[3,2-b]pyran-5-carboxylic acid
Formula	C₁₂ H₁₆ N₃ O₁₁ P
Molecular Weight	409.243
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	14.52	O=C(O)C1OC2C(OC(C2OP(=O)(O)O)N2C=CC(=O)NC2=O)C(N)C1O
SMILES	CACTVS	3.385	N[CH]1[CH](O)[CH](O[CH]2[CH]1O[CH]([CH]2O[P](O)(O)=O)N3C=CC(=O)NC3=O)C(O)=O
SMILES	OpenEye OEToolkits	3.1.0.0	C1=CN(C(=O)NC1=O)C2C(C3C(O2)C(C(C(O3)C(=O)O)O)N)OP(=O)(O)O
Canonical SMILES	CACTVS	3.385	N[C@@H]1[C@@H](O)[C@H](O[C@@H]2[C@@H]1O[C@H]([C@@H]2O[P](O)(O)=O)N3C=CC(=O)NC3=O)C(O)=O
Canonical SMILES	OpenEye OEToolkits	3.1.0.0	C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@H]3[C@H](O2)[C@@H]([C@H]([C@H](O3)C(=O)O)O)N)OP(=O)(O)O
InChI	InChI	1.06	InChI=1S/C12H16N3O11P/c13-4-5(17)7(11(18)19)24-8-6(4)25-10(9(8)26-27(21,22)23)15-2-1-3(16)14-12(15)20/h1-2,4-10,17H,13H2,(H,18,19)(H,14,16,20)(H2,21,22,23)/t4-,5-,6-,7+,8-,9-,10-/m1/s1
InChIKey	InChI	1.06	WKDVCFXFVRNMOM-OLYSFKJBSA-N

Related Resource References

Resource Name	Reference
PubChem	156008898

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.