A1AY9

4-{5-[5-(4-carbamimidoylphenyl)-1-methyl-1H-1,3-benzimidazol-2-yl]thiophen-2-yl}benzene-1-carboximidamide

Created:	2024-07-11
Last modified:	2025-08-06

Find Related PDB Entry
1 entries where A1AY9 is found as a standalone ligand

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	55
Chiral Atom Count	0
Bond Count	59
Aromatic Bond Count	27

2D diagram of A1AY9

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	4-{5-[5-(4-carbamimidoylphenyl)-1-methyl-1H-1,3-benzimidazol-2-yl]thiophen-2-yl}benzene-1-carboximidamide
Systematic Name (OpenEye OEToolkits)	4-[2-[5-(4-carbamimidoylphenyl)thiophen-2-yl]-1-methyl-benzimidazol-5-yl]benzenecarboximidamide
Formula	C₂₆ H₂₂ N₆ S
Molecular Weight	450.558
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	N=C(N)c1ccc(cc1)c1cc2nc(n(C)c2cc1)c1ccc(s1)c1ccc(cc1)C(=N)N
SMILES	CACTVS	3.385	Cn1c2ccc(cc2nc1c3sc(cc3)c4ccc(cc4)C(N)=N)c5ccc(cc5)C(N)=N
SMILES	OpenEye OEToolkits	2.0.7	Cn1c2ccc(cc2nc1c3ccc(s3)c4ccc(cc4)C(=N)N)c5ccc(cc5)C(=N)N
Canonical SMILES	CACTVS	3.385	Cn1c2ccc(cc2nc1c3sc(cc3)c4ccc(cc4)C(N)=N)c5ccc(cc5)C(N)=N
Canonical SMILES	OpenEye OEToolkits	2.0.7	[H]/N=C(\c1ccc(cc1)c2ccc3c(c2)nc(n3C)c4ccc(s4)c5ccc(cc5)/C(=N\[H])/N)/N
InChI	InChI	1.06	InChI=1S/C26H22N6S/c1-32-21-11-10-19(15-2-6-17(7-3-15)24(27)28)14-20(21)31-26(32)23-13-12-22(33-23)16-4-8-18(9-5-16)25(29)30/h2-14H,1H3,(H3,27,28)(H3,29,30)
InChIKey	InChI	1.06	VXKYAQDFRKKEOR-UHFFFAOYSA-N

Related Resource References

Resource Name	Reference
PubChem	138556048

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.