5HC

2'-deoxy-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate)

Created:	2012-08-22
Last modified:	2013-01-11

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32 entries where 5HC is found in a polymer sequence

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Chemical Details
Formal Charge	0
Atom Count	38
Chiral Atom Count	3
Bond Count	39
Aromatic Bond Count	0

2D diagram of 5HC

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Chemical Component Summary
Name	2'-deoxy-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate)
Systematic Name (OpenEye OEToolkits)	[(2R,3S,5R)-5-[4-azanyl-5-(hydroxymethyl)-2-oxidanylidene-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Formula	C₁₀ H₁₆ N₃ O₈ P
Molecular Weight	337.223
Type	DNA LINKING

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C(=C1)CO)CC2O
SMILES	CACTVS	3.370	NC1=NC(=O)N(C=C1CO)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
SMILES	OpenEye OEToolkits	1.7.6	C1C(C(OC1N2C=C(C(=NC2=O)N)CO)COP(=O)(O)O)O
Canonical SMILES	CACTVS	3.370	NC1=NC(=O)N(C=C1CO)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
Canonical SMILES	OpenEye OEToolkits	1.7.6	C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)CO)COP(=O)(O)O)O
InChI	InChI	1.03	InChI=1S/C10H16N3O8P/c11-9-5(3-14)2-13(10(16)12-9)8-1-6(15)7(21-8)4-20-22(17,18)19/h2,6-8,14-15H,1,3-4H2,(H2,11,12,16)(H2,17,18,19)/t6-,7+,8+/m0/s1
InChIKey	InChI	1.03	BTIWPBKNTZFNRI-XLPZGREQSA-N

Related Resource References

Resource Name	Reference
PubChem	440189
ChEBI	CHEBI:16952

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