GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 9TBM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 9TBM_GDP_A_202 | 98% | 26% | 0.046 | 0.981 | 1.23 | 1.67 | 3 | 7 | 0 | 0 | 100% | 1 |
| 9TBM_GDP_C_201 | 98% | 30% | 0.051 | 0.979 | 1.19 | 1.52 | 4 | 5 | 0 | 0 | 100% | 1 |
| 9TBM_GDP_B_202 | 95% | 21% | 0.059 | 0.969 | 1.27 | 1.9 | 2 | 10 | 0 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 4LRW_GDP_A_202 | 100% | 25% | 0.017 | 0.998 | 1.17 | 1.77 | 3 | 7 | 1 | 0 | 100% | 1 |
| 5US4_GDP_B_201 | 100% | 10% | 0.017 | 0.998 | 2.23 | 1.94 | 12 | 9 | 0 | 0 | 100% | 1 |
| 5V71_GDP_D_201 | 100% | 26% | 0.015 | 0.998 | 1.02 | 1.84 | 2 | 9 | 1 | 0 | 100% | 1 |
| 6BOF_GDP_A_201 | 100% | 72% | 0.017 | 0.998 | 0.47 | 0.48 | - | - | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |
| 4EKC_GDP_A_400 | 100% | 24% | 0.016 | 0.999 | 1.2 | 1.82 | 4 | 6 | 3 | 0 | 100% | 1 |
