☰ Navigation Tabs
From KRASG12D to pan-KRAS inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 293 containing 0.1M NaH2PO4/Na2HPO4 pH 9, 30.0% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.06 40.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.852 α = 90 b = 103.938 β = 106.69 c = 56.939 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 16M 2019-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99988 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 54.54 88.8 0.071 11.1 3.3 74513
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.768 54.5 0.992 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.6 54.54 41598 2198 63.91 0.2004 0.19755 0.2063 0.25367 0.2563 RANDOM 36.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 -0.29 0.34 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.677 r_dihedral_angle_4_deg 16.971 r_dihedral_angle_3_deg 16.608 r_dihedral_angle_1_deg 13.585 r_long_range_B_refined 6.098 r_long_range_B_other 6.079 r_scbond_it 2.791 r_scbond_other 2.791 r_mcbond_it 1.986 r_mcbond_other 1.985
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.677 r_dihedral_angle_4_deg 16.971 r_dihedral_angle_3_deg 16.608 r_dihedral_angle_1_deg 13.585 r_long_range_B_refined 6.098 r_long_range_B_other 6.079 r_scbond_it 2.791 r_scbond_other 2.791 r_mcbond_it 1.986 r_mcbond_other 1.985 r_angle_refined_deg 1.412 r_angle_other_deg 0.493 r_chiral_restr 0.066 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3815 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 127
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing