GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 6X5H designated by the Author
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
6X5H_GDP_A_601 | 80% | 43% | 0.143 | 0.992 | 1.17 | 1.06 | 4 | 2 | 0 | 0 | 100% | 1 |
6X5H_GDP_B_601 | 78% | 37% | 0.149 | 0.993 | 1.4 | 1.1 | 3 | 5 | 0 | 0 | 100% | 1 |
6X5H_GDP_C_601 | 31% | 31% | 0.266 | 0.938 | 1.46 | 1.28 | 4 | 4 | 0 | 0 | 100% | 1 |
6X5R_GDP_C_600 | 82% | 48% | 0.133 | 0.989 | 0.98 | 1.03 | 1 | 2 | 0 | 0 | 100% | 1 |
6TKV_GDP_A_601 | 80% | 29% | 0.122 | 0.972 | 1.26 | 1.56 | 2 | 6 | 0 | 0 | 100% | 0.9 |
6X5T_GDP_F_600 | 77% | 33% | 0.147 | 0.987 | 1.46 | 1.19 | 4 | 4 | 1 | 0 | 100% | 1 |
6X5S_GDP_D_600 | 61% | 29% | 0.196 | 0.986 | 1.43 | 1.39 | 4 | 6 | 0 | 0 | 100% | 1 |
6X5U_GDP_G_600 | 56% | 34% | 0.195 | 0.967 | 1.47 | 1.15 | 4 | 3 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
2PHN_GDP_A_2696 | 100% | 44% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |