5Y3L
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG is a Ligand Of Interest in 5Y3L designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
5Y3L_NAG_A_1008 | 88% | 50% | 0.092 | 0.968 | 0.43 | 1.47 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1008 | 78% | 57% | 0.115 | 0.957 | 0.34 | 1.3 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1009 | 75% | 56% | 0.134 | 0.967 | 0.49 | 1.19 | - | 2 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1009 | 70% | 61% | 0.145 | 0.965 | 0.37 | 1.07 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1004 | 60% | 55% | 0.166 | 0.954 | 0.34 | 1.35 | - | 2 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1006 | 57% | 57% | 0.128 | 0.904 | 0.45 | 1.16 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1004 | 53% | 49% | 0.178 | 0.939 | 0.45 | 1.51 | - | 4 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1007 | 49% | 46% | 0.175 | 0.924 | 0.53 | 1.54 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1006 | 49% | 61% | 0.151 | 0.899 | 0.5 | 0.96 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1007 | 37% | 36% | 0.193 | 0.892 | 0.74 | 1.87 | - | 7 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1003 | 37% | 50% | 0.221 | 0.92 | 0.44 | 1.48 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1005 | 23% | 45% | 0.247 | 0.872 | 0.74 | 1.42 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1003 | 14% | 42% | 0.251 | 0.801 | 0.91 | 1.36 | 1 | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1005 | 13% | 29% | 0.264 | 0.808 | 0.73 | 2.21 | - | 2 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1010 | 11% | 27% | 0.349 | 0.864 | 0.77 | 2.28 | - | 5 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1010 | 3% | 17% | 0.435 | 0.767 | 1.13 | 2.66 | 1 | 7 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_B_1009 | 91% | 44% | 0.08 | 0.966 | 0.57 | 1.61 | - | 4 | 0 | 0 | 100% | 0.9333 |
3WPC_NAG_A_902 | 73% | 49% | 0.1 | 0.928 | 0.8 | 1.16 | 1 | 2 | 0 | 0 | 100% | 0.9333 |
5Y3K_NAG_B_1008 | 72% | 63% | 0.127 | 0.951 | 0.32 | 1.06 | - | 2 | 0 | 0 | 100% | 0.9333 |
3WPD_NAG_A_907 | 64% | 54% | 0.148 | 0.949 | 0.55 | 1.22 | - | 1 | 0 | 0 | 100% | 0.9333 |
3WPB_NAG_A_902 | 63% | 30% | 0.152 | 0.95 | 0.44 | 2.43 | - | 3 | 1 | 0 | 100% | 0.9333 |
1OC7_NAG_A_500 | 100% | 60% | 0.04 | 0.991 | 0.61 | 0.9 | - | 1 | 0 | 0 | 100% | 0.9333 |
1OC6_NAG_A_500 | 100% | 67% | 0.041 | 0.988 | 0.46 | 0.8 | - | 1 | 0 | 0 | 100% | 0.9333 |
1UWC_NAG_A_262 | 100% | 54% | 0.046 | 0.99 | 0.81 | 0.95 | - | - | 0 | 0 | 100% | 0.9333 |
6ZE6_NAG_B_703 | 99% | 52% | 0.044 | 0.984 | 0.78 | 1.07 | - | 2 | 0 | 0 | 100% | 0.8667 |
6ZE2_NAG_B_704 | 99% | 56% | 0.042 | 0.979 | 0.73 | 0.95 | - | 1 | 0 | 0 | 100% | 0.9333 |