Ligand validation:5Y3L

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
5Y3L_NAG_A_1008	94%	47%	0.054	0.96	0.44	1.46	-	4	0	100%	1
5Y3L_NAG_A_1009	92%	52%	0.06	0.958	0.48	1.21	-	2	0	100%	1
5Y3L_NAG_B_1008	89%	53%	0.064	0.949	0.35	1.3	-	2	0	100%	1
5Y3L_NAG_B_1009	86%	58%	0.066	0.94	0.36	1.06	-	1	0	100%	1
5Y3L_NAG_B_1004	85%	53%	0.06	0.93	0.35	1.29	-	1	0	100%	1
5Y3L_NAG_A_1004	81%	46%	0.066	0.919	0.46	1.49	-	4	0	100%	1
5Y3L_NAG_A_1006	77%	55%	0.08	0.923	0.45	1.12	-	2	0	100%	1
5Y3L_NAG_B_1006	64%	57%	0.091	0.888	0.51	0.96	-	-	0	100%	1
5Y3L_NAG_B_1007	58%	43%	0.095	0.873	0.53	1.53	-	2	0	100%	1
5Y3L_NAG_A_1007	58%	31%	0.095	0.871	0.73	1.86	-	7	0	100%	1
5Y3L_NAG_B_1005	58%	40%	0.083	0.857	0.77	1.44	1	1	0	100%	1
5Y3L_NAG_B_1003	33%	49%	0.112	0.79	0.45	1.38	-	3	0	100%	1
5Y3L_NAG_B_1010	32%	21%	0.119	0.789	0.8	2.37	-	5	0	100%	1
5Y3L_NAG_A_1005	24%	24%	0.103	0.73	0.75	2.22	-	2	0	100%	1
5Y3L_NAG_A_1003	16%	38%	0.135	0.708	0.94	1.37	1	3	0	100%	1
5Y3L_NAG_A_1010	16%	12%	0.136	0.707	1.19	2.68	1	7	0	100%	1
3WPD_NAG_A_907	91%	51%	0.061	0.952	0.54	1.2	-	1	0	100%	1
5Y3K_NAG_A_1009	89%	59%	0.064	0.95	0.31	1.08	-	1	1	100%	1
5Y3J_NAG_B_1009	89%	40%	0.065	0.949	0.55	1.62	-	4	0	100%	1
3WPC_NAG_B_902	79%	45%	0.082	0.932	0.71	1.3	1	2	0	100%	1
3WPB_NAG_A_902	77%	25%	0.085	0.926	0.42	2.45	-	3	1	100%	1
2QFR_NAG_B_451	100%	64%	0.013	0.998	0.49	0.72	-	1	0	100%	1
5LDS_NAG_C_1003	100%	66%	0.016	0.997	0.54	0.62	-	-	3	100%	1
7DDF_NAG_B_401	100%	84%	0.016	0.996	0.21	0.49	-	-	0	100%	1
2HQM_NAG_A_1301	100%	62%	0.018	0.996	0.59	0.7	-	-	0	100%	1
3THD_NAG_C_704	100%	59%	0.019	0.994	0.45	0.96	-	-	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5Y3L | pdb_00005y3l