Ligand validation:5VR8

UDX: URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE

UDX is a Ligand Of Interest in 5VR8 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5VR8_UDX_B_502	93%	53%	0.091	0.987	0.76	1.06	1	3	0	0	100%	1
5VR8_UDX_F_501	93%	60%	0.091	0.985	0.75	0.76	-	1	0	0	100%	1
5VR8_UDX_C_501	92%	54%	0.097	0.989	0.79	0.99	1	2	0	0	100%	1
5VR8_UDX_D_502	92%	52%	0.096	0.987	0.88	0.97	2	1	0	0	100%	1
5VR8_UDX_A_502	91%	61%	0.098	0.986	0.64	0.84	-	2	0	0	100%	1
5VR8_UDX_E_502	91%	57%	0.096	0.983	0.79	0.86	2	1	0	0	100%	1
5VR8_UDX_A_501	81%	52%	0.121	0.974	0.81	1.03	1	2	0	0	100%	1
5VR8_UDX_D_501	80%	51%	0.122	0.971	0.74	1.15	-	2	0	0	100%	1
5VR8_UDX_B_501	79%	51%	0.128	0.975	0.8	1.08	1	2	1	0	100%	1
5VR8_UDX_E_501	74%	53%	0.131	0.962	0.85	0.98	2	2	0	0	100%	1
3PTZ_UDX_A_501	89%	24%	0.109	0.99	1.2	2.02	4	13	0	0	100%	1
6C58_UDX_A_501	84%	55%	0.109	0.972	0.72	1.01	-	3	0	0	100%	1
3PRJ_UDX_E_501	74%	23%	0.153	0.984	1.3	2.02	3	8	0	0	100%	1
4WNH_UDX_A_402	84%	36%	0.093	0.954	1.03	1.55	3	8	0	0	100%	0.9
6OM8_UDX_J_501	78%	40%	0.133	0.976	0.97	1.42	3	6	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.