Ligand validation:5VMT

NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE

NAD is a Ligand Of Interest in 5VMT designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5VMT_NAD_F_401	87%	66%	0.107	0.978	0.53	0.78	-	1	0	0	100%	1
5VMT_NAD_B_401	83%	65%	0.119	0.979	0.62	0.71	-	2	0	0	100%	1
5VMT_NAD_D_401	79%	66%	0.123	0.97	0.57	0.74	-	2	0	0	100%	1
5VMT_NAD_A_401	79%	69%	0.126	0.972	0.54	0.65	-	1	2	0	100%	1
5VMT_NAD_H_401	78%	68%	0.12	0.963	0.52	0.69	-	1	1	0	100%	1
5VMT_NAD_G_401	60%	69%	0.148	0.933	0.58	0.6	-	1	3	0	100%	1
5VMT_NAD_C_401	48%	67%	0.17	0.912	0.58	0.69	-	2	3	0	100%	0.92
5VMT_NAD_E_401	35%	69%	0.192	0.878	0.59	0.62	-	1	3	0	100%	0.89
9ZAG_NAD_E_403	100%	38%	0.041	0.984	1.16	1.26	5	6	0	0	100%	1
9Z9C_NAD_N_401	98%	39%	0.054	0.976	1.37	1.02	4	3	0	0	100%	1
9Y4U_NAD_B_401	96%	33%	0.063	0.969	1.31	1.36	4	6	2	0	100%	1
9ZAO_NAD_A_401	95%	41%	0.062	0.964	1.3	1	5	2	0	0	100%	1
2O2Y_NAD_B_1450	100%	23%	0.024	0.995	1.79	1.4	5	3	1	0	100%	1
3CMC_NAD_R_408	100%	20%	0.016	0.998	1.63	1.74	4	9	0	0	100%	1
4RQU_NAD_B_403	100%	3%	0.019	0.997	3.51	2.61	13	18	0	0	100%	1
2BJK_NAD_A_1517	100%	59%	0.025	0.995	0.72	0.86	-	1	1	0	100%	0.86
3EC7_NAD_A_400	100%	18%	0.025	0.995	1.8	1.74	5	8	1	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.