XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 5NHD designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5NHD_XYP_A_504 | 49% | 53% | 0.107 | 0.852 | 0.55 | 1.13 | - | 1 | 0 | 0 | 100% | 1 |
| 5NHD_XYP_B_508 | 44% | 61% | 0.12 | 0.846 | 0.5 | 0.82 | - | 1 | 0 | 0 | 100% | 1 |
| 5NHD_XYP_B_505 | 43% | 34% | 0.12 | 0.839 | 0.82 | 1.65 | - | 3 | 0 | 0 | 100% | 1 |
| 5NHD_XYP_A_507 | 36% | 35% | 0.131 | 0.823 | 1.11 | 1.36 | 1 | 2 | 0 | 0 | 100% | 1 |
| 5NHD_XYP_B_504 | 34% | 56% | 0.134 | 0.814 | 0.49 | 1.04 | - | - | 1 | 0 | 100% | 1 |
| 5NHD_XYP_C_505 | 32% | 26% | 0.128 | 0.801 | 1.03 | 1.86 | - | 4 | 1 | 0 | 100% | 1 |
| 5NHD_XYP_C_506 | 24% | 58% | 0.139 | 0.768 | 0.51 | 0.94 | - | 1 | 0 | 0 | 100% | 1 |
| 5NHD_XYP_A_506 | 23% | 67% | 0.157 | 0.781 | 0.44 | 0.67 | - | - | 0 | 0 | 100% | 1 |
| 5NHD_XYP_B_506 | 15% | 45% | 0.175 | 0.741 | 0.46 | 1.52 | - | 3 | 0 | 0 | 100% | 1 |
| 5NHD_XYP_D_506 | 13% | 52% | 0.176 | 0.718 | 0.51 | 1.18 | - | - | 1 | 0 | 100% | 1 |
| 6T8E_XYP_D_504 | 97% | 56% | 0.048 | 0.974 | 0.53 | 1 | - | 1 | 0 | 0 | 100% | 1 |
| 5NHE_XYP_A_507 | 62% | 54% | 0.1 | 0.891 | 0.57 | 1.03 | - | 1 | 1 | 0 | 100% | 1 |
| 6T8F_XYP_A_504 | 58% | 39% | 0.105 | 0.881 | 0.8 | 1.44 | - | 3 | 0 | 0 | 100% | 1 |
| 5NH9_XYP_C_501 | 53% | 34% | 0.106 | 0.864 | 1.02 | 1.48 | - | 3 | 1 | 0 | 100% | 1 |
| 5NH8_XYP_D_504 | 50% | 57% | 0.111 | 0.859 | 0.51 | 0.96 | - | - | 0 | 0 | 100% | 1 |
| 4PMY_XYP_A_401 | 100% | 73% | 0.017 | 0.996 | 0.47 | 0.45 | - | - | 0 | 0 | 100% | 1 |
| 1OD8_XYP_A_1311 | 100% | 64% | 0.027 | 0.992 | 0.69 | 0.55 | - | - | 0 | 0 | 100% | 1 |
| 3FYU_XYP_C_1001 | 100% | 48% | 0.033 | 0.993 | 1.11 | 0.8 | - | - | 0 | 0 | 100% | 1 |
| 5L6G_XYP_A_510 | 100% | 65% | 0.033 | 0.988 | 0.42 | 0.77 | - | - | 0 | 0 | 100% | 1 |
| 1W9T_XYP_B_1148 | 100% | 20% | 0.022 | 0.994 | 1.19 | 2.06 | 1 | 5 | 6 | 0 | 90% | 1 |
