5NDF | pdb_00005ndf


UDP: URIDINE-5'-DIPHOSPHATE

UDP is a Ligand Of Interest in 5NDF designated by the RCSB
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Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5NDF_UDP_A_602 98% 31% 0.047 0.9811.08 1.53 1 700100%1
5NDF_UDP_C_602 94% 22% 0.059 0.9661.15 1.97 3 700100%1
5NDF_UDP_E_602 94% 26% 0.06 0.9671.35 1.52 6 500100%1
5NDF_UDP_B_602 94% 30% 0.064 0.9691.26 1.45 2 600100%1
5NDF_UDP_D_602 90% 23% 0.072 0.9591.29 1.76 3 800100%1
5NDF_UDP_F_602 73% 22% 0.096 0.9261.28 1.82 4 900100%1
6E7I_UDP_A_601 100% 23% 0.017 0.9971.41 1.64 3 700100%1
4D0T_UDP_C_1571 100% 30% 0.025 0.9961.17 1.52 3 800100%1
5AJP_UDP_A_1570 99% 29% 0.044 0.9841.21 1.51 2 400100%1
2FFU_UDP_A_601 95% 8% 0.059 0.972.57 2.07 6 1000100%1
2FFV_UDP_A_5601 92% 7% 0.067 0.9662.66 2.16 8 1210100%1
5F87_UDP_A_501 100% 29% 0.013 0.9991.18 1.54 2 420100%1
5V0T_UDP_B_501 100% 69% 0.014 0.9990.43 0.61 - 100100%1
7FGA_UDP_D_401 100% 2% 0.014 0.9993.6 2.79 15 1220100%1
8X3Q_UDP_D_401 100% 3% 0.013 0.9993.5 2.77 14 1400100%1
8X3U_UDP_B_401 100% 3% 0.012 0.9993.51 2.73 14 1220100%1