UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5JUC designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 5JUC_UDP_A_401 | 74% | 72% | 0.088 | 0.921 | 0.47 | 0.49 | - | 1 | 0 | 0 | 100% | 1 |
| 5JUD_UDP_A_401 | 88% | 4% | 0.098 | 0.982 | 3.83 | 1.81 | 13 | 9 | 1 | 0 | 100% | 0.48 |
| 5JT0_UDP_A_402 | 77% | 70% | 0.096 | 0.938 | 0.51 | 0.5 | - | - | 1 | 0 | 100% | 0.92 |
| 4DEC_UDP_A_401 | 75% | 23% | 0.102 | 0.937 | 1.39 | 1.67 | 3 | 6 | 0 | 0 | 100% | 1 |
| 3E25_UDP_A_339 | 50% | 4% | 0.156 | 0.908 | 3.51 | 2.02 | 9 | 11 | 6 | 0 | 100% | 0.66 |
| 4DE7_UDP_A_401 | 3% | 25% | 0.392 | 0.81 | 0.8 | 2.08 | - | 7 | 0 | 0 | 64% | 0.59 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |