5YPM | pdb_00005ypm


8YL: (2S,3R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfan yl-3-methyl-2,3-dihydro-1H-pyrrole-5-carboxylic acid

8YL is a Ligand Of Interest in 5YPM designated by the RCSB
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Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5YPM_8YL_C_303 100% 6% 0.029 0.9932.34 2.59 3 420100%0.88
5YPM_8YL_B_303 100% 6% 0.032 0.9952.33 2.56 3 820100%0.92
5YPM_8YL_F_303 100% 5% 0.033 0.9942.32 2.83 3 600100%0.98
5YPM_8YL_A_303 100% 6% 0.036 0.9932.33 2.63 3 600100%0.98
5YPM_8YL_D_303 100% 6% 0.037 0.9922.31 2.56 3 600100%0.86
5YPM_8YL_G_303 99% 5% 0.038 0.992.38 2.81 3 730100%0.98
5YPM_8YL_E_303 99% 5% 0.04 0.9912.34 2.8 3 500100%0.88
5YPM_8YL_H_303 99% 6% 0.047 0.9912.36 2.62 3 520100%0.79
5N0H_8YL_A_301 53% 10% 0.139 0.9021.51 2.72 6 630100%0.6
7LLB_8YL_A_301 41% 34% 0.142 0.8571 1.51 1 520100%1
6ZW2_8YL_A_402 19% 16% 0.141 0.7960.95 2.56 1 20067%0.25