AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE
AP5 is a Ligand Of Interest in 5YCC designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5YCC_AP5_B_201 | 77% | 2% | 0.135 | 0.977 | 4.83 | 2.26 | 15 | 11 | 1 | 0 | 100% | 1 |
| 5YCC_AP5_A_201 | 72% | 2% | 0.147 | 0.971 | 4.91 | 2.26 | 15 | 12 | 3 | 0 | 100% | 1 |
| 5X6K_AP5_A_201 | 95% | 32% | 0.082 | 0.985 | 1.18 | 1.62 | 4 | 8 | 1 | 0 | 100% | 1 |
| 5XRU_AP5_A_201 | 90% | 33% | 0.095 | 0.979 | 1.04 | 1.71 | 3 | 13 | 0 | 0 | 100% | 1 |
| 5X6L_AP5_A_201 | 88% | 3% | 0.101 | 0.976 | 4.54 | 2.06 | 15 | 9 | 1 | 0 | 100% | 1 |
| 5YCB_AP5_A_201 | 84% | 2% | 0.115 | 0.976 | 4.75 | 2.36 | 14 | 13 | 1 | 0 | 100% | 1 |
| 3AKY_AP5_A_301 | 99% | 25% | 0.057 | 0.991 | 1.42 | 1.76 | 8 | 9 | 0 | 0 | 100% | 1 |
| 3BE4_AP5_A_219 | 99% | 12% | 0.059 | 0.991 | 2.08 | 2.2 | 10 | 13 | 1 | 0 | 100% | 1 |
| 4MKF_AP5_A_303 | 99% | 30% | 0.06 | 0.988 | 1.35 | 1.55 | 6 | 8 | 0 | 0 | 100% | 1 |
| 4MKG_AP5_A_303 | 99% | 49% | 0.06 | 0.988 | 0.96 | 1.03 | 3 | 3 | 0 | 0 | 100% | 1 |
| 1AKY_AP5_A_301 | 98% | 37% | 0.059 | 0.985 | 1.12 | 1.42 | 4 | 6 | 0 | 0 | 100% | 1 |
