Ligand validation:5X5D

UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE

UMP is a Ligand Of Interest in 5X5D designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5X5D_UMP_B_401	93%	8%	0.084	0.979	2.48	2.29	8	9	1	0	100%	1
5X5D_UMP_D_401	93%	11%	0.09	0.984	2.53	1.82	7	5	0	0	100%	1
5X5D_UMP_A_401	91%	8%	0.093	0.981	2.41	2.34	7	11	0	0	100%	1
5X5D_UMP_F_401	88%	8%	0.099	0.975	2.66	2.09	7	8	1	0	100%	1
5X5D_UMP_C_401	83%	9%	0.118	0.978	2.63	2.09	10	8	0	0	100%	1
5X5D_UMP_E_401	74%	9%	0.143	0.975	2.79	1.94	13	7	0	0	100%	1
5X66_UMP_A_401	96%	17%	0.076	0.987	1.95	1.86	7	6	0	0	100%	1
5X67_UMP_B_401	95%	20%	0.082	0.985	1.86	1.67	4	5	0	0	100%	1
5X5Q_UMP_E_401	92%	11%	0.091	0.983	2.44	1.96	6	6	0	0	100%	1
1HVY_UMP_D_317	90%	7%	0.094	0.976	3.48	1.49	7	5	0	0	100%	1
1JU6_UMP_C_314	79%	4%	0.125	0.973	4.18	1.8	5	7	1	0	100%	1
3TQ4_UMP_A_777	100%	34%	0.038	0.99	1.04	1.65	1	8	0	0	100%	0.8
3TPY_UMP_A_154	100%	41%	0.041	0.993	0.89	1.44	1	5	0	0	100%	0.3
3TQ5_UMP_A_777	100%	24%	0.046	0.989	1.35	1.9	3	6	0	0	100%	1
3TQ3_UMP_A_777	100%	40%	0.049	0.99	0.91	1.5	1	5	0	0	100%	0.3
3TRN_UMP_A_777	99%	32%	0.047	0.987	1.2	1.58	2	6	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.