UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5U6M designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5U6M_UDP_A_502 | 96% | 7% | 0.057 | 0.968 | 3.22 | 1.6 | 14 | 10 | 0 | 0 | 100% | 1 |
| 5U6M_UDP_B_502 | 95% | 7% | 0.061 | 0.962 | 3.23 | 1.59 | 13 | 8 | 1 | 0 | 100% | 1 |
| 5U6N_UDP_A_504 | 99% | 8% | 0.048 | 0.981 | 3.09 | 1.62 | 13 | 7 | 0 | 0 | 100% | 1 |
| 5U6S_UDP_B_503 | 99% | 9% | 0.05 | 0.978 | 3 | 1.46 | 13 | 7 | 0 | 0 | 100% | 1 |
| 5V2J_UDP_B_503 | 86% | 10% | 0.112 | 0.981 | 3.03 | 1.36 | 12 | 6 | 0 | 0 | 100% | 1 |
| 5V2K_UDP_A_503 | 84% | 11% | 0.117 | 0.981 | 2.98 | 1.24 | 12 | 5 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_D_401 | 100% | 3% | 0.012 | 0.999 | 3.38 | 2.71 | 14 | 13 | 1 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.3 | 2.73 | 13 | 14 | 0 | 0 | 100% | 1 |
| 8VH8_UDP_B_704 | 100% | 61% | 0.03 | 0.994 | 0.59 | 0.91 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
