GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5O74 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5O74_GDP_B_500 | 50% | 21% | 0.186 | 0.939 | 1.16 | 2.3 | 2 | 10 | 0 | 0 | 100% | 1 |
5O74_GDP_H_500 | 47% | 23% | 0.191 | 0.93 | 1.18 | 2.13 | 2 | 9 | 1 | 0 | 100% | 1 |
5O74_GDP_L_500 | 39% | 25% | 0.18 | 0.886 | 1.16 | 2.01 | 2 | 7 | 0 | 0 | 100% | 1 |
5O74_GDP_D_500 | 20% | 25% | 0.182 | 0.786 | 1.12 | 2.08 | 2 | 7 | 0 | 0 | 100% | 1 |
5O74_GDP_F_500 | 17% | 24% | 0.23 | 0.811 | 1.15 | 2.13 | 3 | 9 | 0 | 0 | 100% | 1 |
5O74_GDP_J_500 | 15% | 28% | 0.227 | 0.79 | 1.13 | 1.91 | 2 | 9 | 1 | 0 | 100% | 1 |
8ALK_GDP_B_201 | 79% | 44% | 0.118 | 0.965 | 0.93 | 1.28 | 1 | 4 | 0 | 0 | 100% | 1 |
4I1O_GDP_G_202 | 79% | 40% | 0.129 | 0.976 | 1.22 | 1.18 | 1 | 4 | 2 | 0 | 100% | 1 |
4HLQ_GDP_D_202 | 64% | 19% | 0.164 | 0.965 | 1.85 | 1.75 | 5 | 4 | 0 | 0 | 100% | 1 |
6SKU_GDP_B_201 | 62% | 24% | 0.165 | 0.959 | 1.18 | 2.05 | 2 | 8 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 19% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
2PHN_GDP_A_2696 | 100% | 45% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |