Ligand validation:5NHE

XYP: beta-D-xylopyranose

XYP is a Ligand Of Interest in 5NHE designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5NHE_XYP_A_504	34%	55%	0.196	0.88	0.42	1.3	-	2	0	0	100%	1
5NHE_XYP_C_504	32%	50%	0.208	0.881	0.61	1.32	-	1	0	0	100%	1
5NHE_XYP_B_506	29%	55%	0.207	0.867	0.5	1.2	-	2	0	0	100%	1
5NHE_XYP_B_504	25%	58%	0.215	0.85	0.41	1.16	-	1	0	0	100%	1
5NHE_XYP_A_507	17%	53%	0.279	0.855	0.6	1.19	-	2	1	0	100%	1
5NHE_XYP_A_506	16%	63%	0.228	0.799	0.5	0.91	-	-	0	0	100%	1
5NHE_XYP_D_505	9%	21%	0.249	0.745	0.87	2.43	-	4	0	0	100%	1
5NHE_XYP_C_506	5%	9%	0.376	0.791	1.18	3.28	2	9	1	0	100%	1
5NH7_XYP_A_504	45%	53%	0.174	0.905	0.68	1.14	-	1	0	0	100%	1
5NH9_XYP_A_504	41%	54%	0.161	0.877	0.68	1.07	-	-	0	0	100%	1
5NH8_XYP_A_504	37%	61%	0.19	0.887	0.56	0.93	-	-	0	0	100%	1
5NHD_XYP_A_504	27%	54%	0.216	0.861	0.58	1.18	-	1	0	0	100%	1
1OD8_XYP_A_1311	100%	64%	0.047	0.992	0.75	0.64	-	-	0	0	100%	1
1V0M_XYP_A_1304	100%	71%	0.035	0.993	0.82	0.33	-	-	0	0	90%	0.9
1V0N_XYP_A_1306	98%	60%	0.048	0.989	0.76	0.78	-	-	0	0	90%	0.9
1V0L_XYP_A_1305	98%	72%	0.055	0.992	0.52	0.57	-	-	0	0	90%	0.9
3C6Q_XYP_C_500	92%	30%	0.082	0.972	1.82	0.99	1	1	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.