YDZ: [[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanyl-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl hydrogen phosphate
YDZ is a Ligand Of Interest in 5M84 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5M84_YDZ_A_301 | 58% | 42% | 0.098 | 0.939 | 0.85 | 1.43 | - | 5 | 0 | 0 | 65% | 0.6538 |
| 5M84_YDZ_B_300 | 20% | 43% | 0.17 | 0.83 | 0.87 | 1.35 | 1 | 2 | 1 | 0 | 65% | 0.6538 |
| 5M83_YDZ_A_301 | 51% | 40% | 0.112 | 0.929 | 0.85 | 1.56 | - | 5 | 1 | 0 | 65% | 0.6538 |
