TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 5LKM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5LKM_TYD_A_500 | 90% | 21% | 0.063 | 0.95 | 1.34 | 1.84 | 4 | 6 | 0 | 0 | 100% | 1 |
| 5LKM_TYD_C_500 | 78% | 21% | 0.087 | 0.933 | 1.33 | 1.85 | 5 | 9 | 0 | 0 | 100% | 1 |
| 5LKM_TYD_B_500 | 51% | 21% | 0.078 | 0.825 | 1.44 | 1.77 | 5 | 6 | 0 | 0 | 100% | 1 |
| 2PAM_TYD_B_140 | 100% | 31% | 0.019 | 0.997 | 1.5 | 1.17 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5TPU_TYD_A_200 | 100% | 21% | 0.022 | 0.995 | 1.32 | 1.86 | 3 | 14 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 100% | 21% | 0.036 | 0.99 | 1.41 | 1.81 | 4 | 7 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_A_377 | 100% | 22% | 0.035 | 0.989 | 1.32 | 1.78 | 3 | 9 | 0 | 0 | 100% | 1 |
| 1PN3_TYD_A_406 | 99% | 53% | 0.04 | 0.991 | 0.96 | 0.74 | 1 | 1 | 5 | 0 | 100% | 1 |
