Ligand validation:5KY8

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 5KY8 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5KY8_GDP_A_402	38%	28%	0.17	0.874	1.03	1.99	2	6	0	0	100%	1
5KXQ_GDP_B_403	98%	23%	0.069	0.989	1.26	2.03	2	8	0	0	100%	1
5KXH_GDP_A_403	98%	31%	0.065	0.984	1.06	1.79	2	6	0	0	100%	1
5KY0_GDP_A_403	95%	31%	0.079	0.983	0.87	1.97	-	8	0	0	100%	1
5KY2_GDP_A_403	94%	29%	0.084	0.985	0.79	2.14	2	5	0	0	100%	1
5KY5_GDP_A_403	91%	18%	0.077	0.963	1.22	2.46	2	7	0	0	100%	1
1RRG_GDP_A_183	100%	19%	0.036	0.997	2.05	1.56	7	3	0	0	100%	1
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
8CNJ_GDP_B_201	100%	56%	0.04	0.992	0.91	0.77	1	-	0	0	100%	1
5UQW_GDP_A_1002	100%	47%	0.04	0.99	1.04	1.01	2	2	0	0	100%	1
2PHN_GDP_A_2696	100%	45%	0.046	0.99	1.08	1.08	1	2	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.