Ligand validation:5JDM

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
5JDM_MYS_A_410	7%	70%	0.169	0.845	0.36	0.62	-	-	0	40%	1
5JDM_MYS_A_413	3%	61%	0.151	0.565	0.35	0.96	-	-	4	100%	1
5JDM_MYS_A_412	3%	62%	0.204	0.715	0.53	0.74	-	-	2	73%	1
5JDM_MYS_A_414	3%	60%	0.231	0.724	0.37	0.95	-	-	1	87%	1
5JDM_MYS_A_409	1%	65%	0.22	0.685	0.37	0.77	-	-	0	67%	1
5JDM_MYS_A_406	1%	63%	0.279	0.687	0.5	0.71	-	-	2	73%	1
5JDM_MYS_A_407	0%	70%	0.25	0.623	0.38	0.62	-	-	0	40%	1
5JDM_MYS_A_411	0%	72%	0.217	0.564	0.39	0.55	-	-	0	33%	1
5JDM_MYS_A_408	0%	64%	0.333	0.379	0.44	0.75	-	-	1	27%	1
5HYA_MYS_A_413	28%	93%	0.11	0.834	0.1	0.35	-	-	1	80%	1
3V5U_MYS_A_720	26%	63%	0.136	0.836	0.45	0.78	-	-	3	93%	1
5HXE_MYS_A_410	14%	63%	0.167	0.784	0.38	0.84	-	-	0	100%	1
5HXH_MYS_A_405	13%	65%	0.141	0.855	0.52	0.63	-	-	1	47%	1
5HXC_MYS_A_415	12%	60%	0.18	0.793	0.53	0.8	-	-	1	100%	1
6GAC_MYS_A_308	92%	71%	0.042	0.972	0.08	0.85	-	-	0	100%	1
6GAI_MYS_A_308	92%	71%	0.043	0.972	0.08	0.85	-	-	0	100%	1
6GA5_MYS_A_308	92%	71%	0.043	0.972	0.08	0.85	-	-	0	100%	1
6GA4_MYS_A_308	92%	70%	0.044	0.973	0.07	0.89	-	-	0	100%	1
6GAB_MYS_A_308	91%	71%	0.045	0.972	0.08	0.85	-	-	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5JDM | pdb_00005jdm