UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5FV9 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5FV9_UDP_A_1570 | 76% | 19% | 0.126 | 0.967 | 1.52 | 1.86 | 4 | 9 | 3 | 0 | 100% | 1 |
| 5FV9_UDP_C_1570 | 65% | 23% | 0.146 | 0.953 | 1.36 | 1.69 | 5 | 7 | 1 | 0 | 100% | 1 |
| 5FV9_UDP_E_1570 | 61% | 25% | 0.146 | 0.939 | 1.27 | 1.66 | 3 | 6 | 2 | 0 | 100% | 0.5 |
| 5FV9_UDP_D_1555 | 59% | 25% | 0.159 | 0.943 | 1.08 | 1.84 | 2 | 8 | 4 | 0 | 100% | 1 |
| 5FV9_UDP_F_1570 | 45% | 18% | 0.167 | 0.902 | 1.55 | 1.85 | 4 | 9 | 6 | 0 | 100% | 0.5 |
| 5FV9_UDP_B_1572 | 38% | 25% | 0.184 | 0.891 | 1.25 | 1.72 | 4 | 6 | 8 | 0 | 100% | 0.5 |
| 6E7I_UDP_A_601 | 98% | 25% | 0.053 | 0.987 | 1.4 | 1.55 | 4 | 7 | 0 | 0 | 100% | 1 |
| 5AJP_UDP_A_1570 | 97% | 34% | 0.056 | 0.982 | 1.01 | 1.49 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5NDF_UDP_A_602 | 95% | 31% | 0.071 | 0.984 | 1.07 | 1.58 | 1 | 7 | 0 | 0 | 100% | 1 |
| 2FFU_UDP_A_601 | 95% | 8% | 0.059 | 0.97 | 2.57 | 2.07 | 6 | 10 | 0 | 0 | 100% | 1 |
| 4D0T_UDP_C_1571 | 86% | 30% | 0.107 | 0.984 | 1.17 | 1.52 | 3 | 8 | 0 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.3 | 2.73 | 13 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_B_704 | 100% | 57% | 0.03 | 0.994 | 0.59 | 0.91 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 40% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 3H4T_UDP_A_604 | 99% | 40% | 0.039 | 0.99 | 1.01 | 1.22 | 2 | 3 | 0 | 0 | 100% | 1 |














