GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5D3Q designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5D3Q_GDP_B_801 | 100% | 27% | 0.033 | 0.987 | 1.25 | 1.61 | 5 | 11 | 2 | 0 | 100% | 1 |
| 5D3Q_GDP_A_801 | 99% | 29% | 0.036 | 0.988 | 1.13 | 1.6 | 4 | 9 | 0 | 0 | 100% | 1 |
| 2X2F_GDP_D_1746 | 99% | 55% | 0.04 | 0.983 | 0.69 | 0.9 | - | 4 | 0 | 0 | 100% | 1 |
| 2X2E_GDP_A_1744 | 98% | 54% | 0.044 | 0.978 | 0.7 | 0.93 | 1 | 3 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_L_401 | 100% | 25% | 0.013 | 0.999 | 1.16 | 1.75 | 3 | 7 | 3 | 0 | 100% | 1 |
| 5V9L_GDP_B_201 | 100% | 34% | 0.013 | 0.998 | 0.98 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 2CNW_GDP_F_1001 | 100% | 23% | 0.014 | 0.999 | 1.21 | 1.86 | 4 | 8 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
