Ligand validation:5CD5

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5CD5 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5CD5_NAG_A_501	18%	40%	0.248	0.838	1.17	1.25	-	2	0	0	100%	0.9333
5CD5_NAG_A_503	8%	55%	0.341	0.811	0.51	1.2	-	1	2	0	100%	0.9333
5CD5_NAG_A_504	5%	40%	0.336	0.757	1.17	1.25	-	2	0	0	100%	0.9333
5CD5_NAG_A_502	5%	77%	0.347	0.777	0.29	0.61	-	-	1	0	93%	0.9333
5CD5_NAG_A_506	3%	44%	0.431	0.751	0.46	1.73	-	4	2	0	100%	0.9333
5CD5_NAG_A_505	0%	58%	0.558	0.488	0.6	0.99	-	1	0	0	100%	0.9333
3SE8_NAG_G_734	94%	67%	0.063	0.961	0.58	0.68	-	-	0	0	100%	0.9333
7SX7_NAG_A_508	92%	70%	0.073	0.964	0.28	0.84	-	1	0	0	100%	0.9333
4DVW_NAG_A_503	91%	65%	0.087	0.973	0.51	0.81	-	-	1	0	100%	0.9333
4OLX_NAG_G_502	89%	76%	0.095	0.976	0.34	0.59	-	-	0	0	100%	0.9333
4H8W_NAG_G_509	89%	21%	0.07	0.949	1.02	2.45	2	6	0	0	100%	0.9333
1OC7_NAG_A_500	100%	60%	0.04	0.991	0.61	0.9	-	1	0	0	100%	0.9333
1OC6_NAG_A_500	100%	67%	0.041	0.988	0.46	0.8	-	1	0	0	100%	0.9333
1UWC_NAG_A_262	100%	54%	0.046	0.99	0.81	0.95	-	-	0	0	100%	0.9333
6ZE6_NAG_B_703	99%	52%	0.044	0.984	0.78	1.07	-	2	0	0	100%	0.8667
6ZE2_NAG_B_704	99%	56%	0.042	0.979	0.73	0.95	-	1	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.