XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 4XUQ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4XUQ_XYP_C_402 | 59% | 40% | 0.141 | 0.924 | 1.24 | 1.09 | 1 | - | 3 | 0 | 100% | 1 |
4XUQ_XYP_C_401 | 56% | 31% | 0.126 | 0.914 | 0.63 | 2.07 | - | 5 | 3 | 0 | 90% | 0.9 |
4XUQ_XYP_B_401 | 46% | 41% | 0.128 | 0.879 | 0.72 | 1.53 | - | 3 | 3 | 0 | 90% | 0.9 |
4XUQ_XYP_A_1001 | 42% | 24% | 0.143 | 0.878 | 0.65 | 2.42 | - | 4 | 4 | 0 | 90% | 0.9 |
4XUQ_XYP_B_402 | 36% | 47% | 0.172 | 0.864 | 0.95 | 1.09 | 1 | 2 | 3 | 0 | 100% | 1 |
4XUR_XYP_B_1003 | 60% | 35% | 0.11 | 0.913 | 0.95 | 1.58 | - | 2 | 0 | 0 | 90% | 0.9 |
1OD8_XYP_A_1311 | 100% | 64% | 0.047 | 0.992 | 0.75 | 0.64 | - | - | 0 | 0 | 100% | 1 |
1V0M_XYP_A_1304 | 100% | 71% | 0.035 | 0.993 | 0.82 | 0.33 | - | - | 0 | 0 | 90% | 0.9 |
1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 0.9 |
1V0L_XYP_A_1305 | 98% | 72% | 0.055 | 0.992 | 0.52 | 0.57 | - | - | 0 | 0 | 90% | 0.9 |
3C6Q_XYP_C_500 | 92% | 30% | 0.082 | 0.972 | 1.82 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |