Ligand validation:4PBU

DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)

DGD is a Ligand Of Interest in 4PBU designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4PBU_DGD_C_516	7%	52%	0.427	0.894	0.87	0.98	3	2	0	0	94%	0.9394
4PBU_DGD_j_101	7%	55%	0.433	0.896	0.87	0.87	3	3	0	0	94%	0.9394
4PBU_DGD_c_917	5%	56%	0.413	0.824	0.88	0.81	2	2	0	0	94%	0.9394
4PBU_DGD_c_916	3%	54%	0.484	0.854	0.85	0.9	3	3	0	0	94%	0.9394
4PBU_DGD_C_517	2%	55%	0.475	0.781	0.88	0.86	2	2	0	0	94%	0.9394
4PBU_DGD_C_518	2%	56%	0.537	0.842	0.79	0.9	3	3	0	0	94%	0.9394
4PBU_DGD_h_102	0%	55%	0.894	0.873	0.9	0.85	3	3	0	0	94%	0.9394
4PBU_DGD_H_102	0%	52%	1.044	0.901	0.92	0.94	3	4	0	0	94%	0.9394
4PBU_DGD_d_406	0%	50%	0.911	0.593	0.97	0.95	3	4	0	0	94%	0.9394
4PBU_DGD_D_406	0%	48%	1.281	0.54	0.99	1.02	4	6	0	0	94%	0.9394
5V2C_DGD_C_516	95%	44%	0.067	0.983	0.89	1.29	5	10	0	0	94%	0.9394
7YQ7_DGD_C_518	87%	51%	0.084	0.967	0.83	1.07	3	5	0	0	94%	0.9394
8IR5_DGD_C_515	85%	48%	0.092	0.97	0.81	1.21	2	8	0	0	94%	0.9394
8IRC_DGD_C_517	85%	48%	0.096	0.973	0.83	1.2	2	8	0	0	94%	0.9394
5ZZN_DGD_c_517	85%	46%	0.09	0.966	1.05	1.06	3	5	0	0	94%	0.9394
7RF1_DGD_c_519	85%	36%	0.093	0.968	1.16	1.45	6	11	0	0	94%	0.9394

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.