L2P: 2,3-DI-PHYTANYL-GLYCEROL
L2P is a Ligand Of Interest in 4MD1 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4MD1_L2P_A_1007 | 27% | 81% | 0.096 | 0.904 | 0.36 | 0.4 | - | - | 0 | 0 | 11% | 1 |
| 4MD1_L2P_A_1006 | 25% | 66% | 0.114 | 0.892 | 0.3 | 0.82 | - | - | 0 | 0 | 22% | 1 |
| 4MD1_L2P_A_1003 | 21% | 64% | 0.119 | 0.876 | 0.31 | 0.9 | - | - | 0 | 0 | 20% | 1 |
| 4MD1_L2P_A_1016 | 21% | 79% | 0.12 | 0.892 | 0.33 | 0.46 | - | - | 0 | 0 | 11% | 1 |
| 4MD1_L2P_A_1013 | 18% | 63% | 0.13 | 0.859 | 0.24 | 1.01 | - | 1 | 0 | 0 | 22% | 1 |
| 4MD1_L2P_A_1001 | 17% | 70% | 0.112 | 0.844 | 0.29 | 0.72 | - | - | 0 | 0 | 17% | 1 |
| 4MD1_L2P_A_1008 | 17% | 74% | 0.123 | 0.857 | 0.3 | 0.59 | - | - | 0 | 0 | 15% | 1 |
| 4MD1_L2P_A_1018 | 16% | 56% | 0.113 | 0.84 | 0.49 | 1.02 | - | - | 3 | 0 | 15% | 1 |
| 4MD1_L2P_A_1009 | 15% | 52% | 0.144 | 0.865 | 0.54 | 1.15 | - | - | 1 | 0 | 15% | 1 |
| 4MD1_L2P_A_1017 | 10% | 58% | 0.199 | 0.882 | 0.25 | 1.19 | - | - | 2 | 0 | 11% | 1 |
| 4MD1_L2P_A_1010 | 10% | 51% | 0.171 | 0.83 | 0.22 | 1.52 | - | 2 | 1 | 0 | 22% | 1 |
| 4MD1_L2P_A_1012 | 8% | 47% | 0.167 | 0.788 | 0.75 | 1.17 | - | 1 | 4 | 0 | 26% | 1 |
| 4MD1_L2P_A_1011 | 8% | 56% | 0.125 | 0.739 | 0.41 | 1.13 | - | 1 | 1 | 0 | 24% | 1 |
| 4MD1_L2P_A_1015 | 7% | 82% | 0.177 | 0.815 | 0.33 | 0.41 | - | - | 0 | 0 | 11% | 1 |
| 4MD1_L2P_A_1019 | 7% | 50% | 0.194 | 0.77 | 0.53 | 1.28 | - | 3 | 5 | 0 | 41% | 1 |
| 4MD1_L2P_A_1004 | 6% | 67% | 0.168 | 0.761 | 0.56 | 0.56 | - | - | 0 | 0 | 20% | 1 |
| 4MD1_L2P_A_1005 | 6% | 61% | 0.149 | 0.737 | 0.34 | 0.98 | - | - | 0 | 0 | 17% | 1 |
| 4MD1_L2P_A_1014 | 3% | 53% | 0.228 | 0.742 | 0.57 | 1.09 | - | - | 0 | 0 | 11% | 1 |
| 6GA3_L2P_A_311 | 97% | 56% | 0.046 | 0.969 | 0.66 | 0.87 | - | 1 | 17 | 0 | 100% | 1 |
| 7XJE_L2P_A_302 | 96% | 30% | 0.067 | 0.988 | 0.47 | 2.14 | - | 10 | 19 | 4 | 100% | 1 |
| 6GAH_L2P_A_311 | 96% | 55% | 0.049 | 0.964 | 0.63 | 0.94 | - | 3 | 15 | 0 | 100% | 1 |
| 6GA5_L2P_A_311 | 95% | 55% | 0.048 | 0.961 | 0.63 | 0.94 | - | 3 | 15 | 0 | 100% | 1 |
| 6GA2_L2P_A_311 | 95% | 55% | 0.05 | 0.961 | 0.63 | 0.94 | - | 3 | 10 | 0 | 100% | 1 |
| 6GA6_L2P_A_311 | 95% | 56% | 0.052 | 0.963 | 0.62 | 0.92 | - | 3 | 12 | 0 | 100% | 1 |
