1YD: 2-amino-9-[(2R,3R,3aR,5S,7aS,9R,10R,10aR,12R,14aS)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one
1YD is a Ligand Of Interest in 4LOK designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4LOK_1YD_B_401 | 86% | 12% | 0.1 | 0.968 | 1.97 | 2.28 | 11 | 19 | 0 | 0 | 100% | 0.33 |
| 6A05_1YD_A_403 | 72% | 27% | 0.113 | 0.936 | 0.94 | 2.13 | 2 | 17 | 1 | 0 | 100% | 1 |
