D5M: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
D5M is a Ligand Of Interest in 4GYZ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4GYZ_D5M_A_401 | 59% | 21% | 0.185 | 0.968 | 1.91 | 1.41 | 6 | 3 | 0 | 0 | 100% | 1 |
4GYZ_D5M_D_402 | 56% | 21% | 0.199 | 0.974 | 1.88 | 1.41 | 6 | 3 | 0 | 0 | 100% | 1 |
4GYZ_D5M_E_401 | 55% | 21% | 0.185 | 0.954 | 1.89 | 1.41 | 6 | 3 | 0 | 0 | 100% | 1 |
4GYZ_D5M_C_402 | 55% | 21% | 0.202 | 0.971 | 1.89 | 1.42 | 6 | 1 | 0 | 0 | 100% | 1 |
4GYZ_D5M_B_401 | 46% | 21% | 0.213 | 0.95 | 1.89 | 1.43 | 6 | 2 | 0 | 0 | 100% | 1 |
4GYZ_D5M_H_401 | 45% | 21% | 0.231 | 0.965 | 1.88 | 1.41 | 6 | 2 | 0 | 0 | 100% | 1 |
6B42_D5M_A_201 | 98% | 52% | 0.066 | 0.986 | 0.82 | 1.04 | 1 | 2 | 0 | 0 | 100% | 1 |
8HCG_D5M_A_306 | 95% | 32% | 0.078 | 0.982 | 1.69 | 1.02 | 7 | 1 | 0 | 0 | 100% | 1 |
6JNL_D5M_C_101 | 89% | 60% | 0.09 | 0.977 | 0.72 | 0.82 | - | 1 | 0 | 0 | 95% | 0.9545 |
2IOC_D5M_B_303 | 85% | 11% | 0.091 | 0.955 | 2.81 | 1.38 | 2 | 1 | 0 | 0 | 100% | 1 |
6CGN_D5M_A_801 | 83% | 59% | 0.106 | 0.964 | 0.72 | 0.86 | - | 2 | 0 | 0 | 100% | 1 |