GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4F9F designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4F9F_GDP_B_600 | 56% | 26% | 0.096 | 0.905 | 1.17 | 1.81 | 3 | 7 | 4 | 0 | 100% | 1 |
| 4F9F_GDP_F_600 | 51% | 27% | 0.104 | 0.895 | 1.16 | 1.79 | 3 | 7 | 3 | 0 | 100% | 0.9 |
| 4F9F_GDP_C_600 | 49% | 27% | 0.11 | 0.897 | 1.16 | 1.8 | 3 | 7 | 0 | 0 | 100% | 0.9 |
| 4F9F_GDP_E_600 | 41% | 26% | 0.135 | 0.898 | 1.18 | 1.79 | 2 | 7 | 0 | 0 | 100% | 1 |
| 4F9F_GDP_D_501 | 40% | 26% | 0.122 | 0.869 | 1.17 | 1.8 | 3 | 7 | 8 | 0 | 100% | 0.8 |
| 4F9F_GDP_A_501 | 22% | 26% | 0.14 | 0.8 | 1.17 | 1.8 | 3 | 7 | 17 | 0 | 100% | 0.8 |
| 4F97_GDP_A_501 | 100% | 23% | 0.022 | 0.996 | 1.16 | 1.98 | 3 | 11 | 0 | 0 | 100% | 1 |
| 8IYF_GDP_A_501 | 98% | 26% | 0.031 | 0.992 | 1.17 | 1.8 | 2 | 7 | 1 | 0 | 100% | 1 |
| 8IYE_GDP_B_501 | 95% | 28% | 0.043 | 0.986 | 1.17 | 1.74 | 3 | 6 | 0 | 0 | 100% | 1 |
| 4F96_GDP_B_501 | 82% | 28% | 0.063 | 0.965 | 1.17 | 1.73 | 3 | 6 | 0 | 0 | 100% | 1 |
| 3VDN_GDP_B_501 | 74% | 23% | 0.07 | 0.944 | 1.27 | 1.9 | 4 | 9 | 2 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 34% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 6EG8_GDP_L_401 | 100% | 28% | 0.013 | 0.999 | 1.16 | 1.75 | 3 | 7 | 3 | 0 | 100% | 1 |
| 2CNW_GDP_F_1001 | 100% | 25% | 0.014 | 0.999 | 1.21 | 1.86 | 4 | 8 | 0 | 0 | 100% | 1 |
| 5V9L_GDP_B_201 | 100% | 35% | 0.013 | 0.998 | 0.98 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 28% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |














