UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4EEG designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4EEG_UDP_A_403 | 97% | 22% | 0.056 | 0.984 | 1.25 | 1.89 | 2 | 7 | 0 | 0 | 100% | 1 |
| 4EEG_UDP_B_403 | 97% | 15% | 0.057 | 0.982 | 1.33 | 2.29 | 3 | 9 | 2 | 0 | 100% | 1 |
| 4EEG_UDP_C_403 | 94% | 23% | 0.067 | 0.972 | 1.12 | 1.9 | 2 | 8 | 1 | 0 | 100% | 1 |
| 4EE5_UDP_B_404 | 80% | 25% | 0.09 | 0.944 | 1.01 | 1.92 | 1 | 7 | 0 | 0 | 100% | 1 |
| 4EEM_UDP_A_403 | 75% | 27% | 0.095 | 0.931 | 1.22 | 1.63 | 2 | 7 | 1 | 0 | 100% | 1 |
| 4EEO_UDP_A_403 | 70% | 29% | 0.1 | 0.918 | 1.25 | 1.5 | 2 | 5 | 0 | 0 | 100% | 1 |
| 2FYB_UDP_A_403 | 67% | 27% | 0.102 | 0.911 | 1.54 | 1.3 | 3 | 5 | 0 | 0 | 100% | 0.95 |
| 4EE4_UDP_B_405 | 55% | 15% | 0.132 | 0.9 | 1.41 | 2.21 | 3 | 7 | 0 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
