UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4D11 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4D11_UDP_A_1572 | 80% | 21% | 0.091 | 0.945 | 1.31 | 1.88 | 3 | 9 | 0 | 0 | 100% | 1 |
| 4D11_UDP_D_1571 | 69% | 21% | 0.106 | 0.923 | 1.37 | 1.8 | 1 | 6 | 0 | 0 | 100% | 1 |
| 4D11_UDP_B_1573 | 66% | 20% | 0.096 | 0.9 | 1.36 | 1.9 | 3 | 7 | 0 | 0 | 100% | 1 |
| 4D11_UDP_E_1572 | 65% | 20% | 0.098 | 0.898 | 1.41 | 1.85 | 3 | 5 | 1 | 0 | 100% | 1 |
| 4D11_UDP_C_1571 | 56% | 19% | 0.104 | 0.873 | 1.49 | 1.83 | 3 | 6 | 0 | 0 | 100% | 1 |
| 4D11_UDP_F_1364 | 44% | 25% | 0.109 | 0.834 | 1.27 | 1.65 | 3 | 5 | 0 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
