Ligand validation:3HDQ

GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE

GDU is a Ligand Of Interest in 3HDQ designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3HDQ_GDU_A_500	83%	3%	0.125	0.985	2.66	3.56	5	15	0	0	100%	0.8439
3HDQ_GDU_G_500	79%	3%	0.13	0.977	2.66	3.64	4	18	3	0	100%	0.8619
3HDQ_GDU_F_500	70%	3%	0.136	0.956	2.7	3.7	4	21	2	0	100%	1
3HDQ_GDU_E_500	67%	3%	0.144	0.955	2.7	3.53	4	16	1	0	100%	1
3HDQ_GDU_C_500	66%	3%	0.136	0.943	2.72	3.55	4	17	1	0	100%	1
3HDQ_GDU_H_500	66%	3%	0.145	0.951	2.76	3.43	5	14	1	0	100%	1
3HDQ_GDU_J_500	66%	3%	0.148	0.953	2.66	3.64	3	17	2	0	100%	1
3HDQ_GDU_I_500	59%	3%	0.157	0.94	2.65	3.73	4	18	2	0	100%	1
3HDQ_GDU_D_500	57%	3%	0.156	0.932	2.72	3.62	6	17	3	0	100%	1
3HDQ_GDU_B_500	55%	3%	0.158	0.928	2.66	3.6	4	18	3	0	100%	1
3HDY_GDU_F_500	72%	3%	0.139	0.963	2.66	3.61	4	15	3	0	100%	1
4HO9_GDU_B_300	99%	27%	0.05	0.983	1.38	1.71	4	9	0	0	100%	1
6GX0_GDU_A_402	97%	48%	0.067	0.98	0.81	1.22	1	6	0	0	100%	0.6
5M7D_GDU_A_402	96%	44%	0.071	0.983	0.91	1.29	1	5	0	0	100%	1
7YS9_GDU_A_404	91%	77%	0.087	0.974	0.39	0.51	-	1	1	0	100%	0.4
4LW3_GDU_A_402	89%	13%	0.104	0.983	2.67	1.52	15	10	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.