Ligand validation:3DL5

UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE

UMP is a Ligand Of Interest in 3DL5 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3DL5_UMP_C_611	48%	9%	0.184	0.928	2.32	2.28	3	9	3	0	100%	1
3DL5_UMP_B_607	46%	9%	0.191	0.928	2.33	2.26	3	8	3	0	100%	1
3DL5_UMP_D_615	41%	9%	0.201	0.919	2.33	2.27	3	8	4	0	100%	1
3DL5_UMP_A_603	37%	9%	0.222	0.922	2.31	2.27	3	9	4	0	100%	1
3DL5_UMP_E_619	35%	9%	0.19	0.876	2.34	2.28	3	8	6	0	100%	1
2OIP_UMP_A_603	58%	12%	0.174	0.954	2.25	2.03	3	9	3	0	100%	1
3DL6_UMP_D_615	57%	11%	0.172	0.947	2.36	2.04	3	9	3	0	100%	1
1SEJ_UMP_E_619	56%	7%	0.175	0.949	2.84	2.18	7	9	2	0	100%	1
1QZF_UMP_E_619	38%	6%	0.216	0.918	3	2.21	6	9	6	0	100%	1
3HJ3_UMP_C_611	6%	6%	0.357	0.78	2.96	2.18	5	9	9	0	100%	1
3TQ4_UMP_A_777	100%	34%	0.038	0.99	1.04	1.65	1	8	0	0	100%	0.8
3TPY_UMP_A_154	100%	41%	0.041	0.993	0.89	1.44	1	5	0	0	100%	0.3
3TQ5_UMP_A_777	100%	24%	0.046	0.989	1.35	1.9	3	6	0	0	100%	1
3TQ3_UMP_A_777	100%	40%	0.049	0.99	0.91	1.5	1	5	0	0	100%	0.3
3TRN_UMP_A_777	99%	32%	0.047	0.987	1.2	1.58	2	6	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.