UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3S28 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3S28_UDP_B_901 | 79% | 32% | 0.141 | 0.989 | 0.97 | 1.85 | - | 8 | 1 | 0 | 100% | 0.98 |
| 3S28_UDP_A_901 | 79% | 34% | 0.145 | 0.993 | 0.99 | 1.71 | 1 | 7 | 3 | 0 | 100% | 1 |
| 3S28_UDP_F_901 | 78% | 34% | 0.148 | 0.992 | 0.99 | 1.69 | 1 | 6 | 1 | 0 | 100% | 1 |
| 3S28_UDP_D_901 | 77% | 30% | 0.147 | 0.989 | 1.02 | 1.88 | - | 8 | 4 | 0 | 100% | 1 |
| 3S28_UDP_G_901 | 76% | 37% | 0.152 | 0.989 | 1.03 | 1.52 | 1 | 7 | 4 | 0 | 100% | 1 |
| 3S28_UDP_E_901 | 72% | 34% | 0.165 | 0.991 | 0.99 | 1.71 | 1 | 7 | 1 | 0 | 100% | 0.96 |
| 3S28_UDP_C_901 | 66% | 38% | 0.175 | 0.981 | 0.92 | 1.56 | - | 6 | 0 | 0 | 100% | 0.96 |
| 3S28_UDP_H_901 | 65% | 34% | 0.176 | 0.981 | 0.95 | 1.75 | - | 5 | 4 | 0 | 100% | 0.95 |
| 4PHR_UDP_A_301 | 100% | 43% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 47% | 0.046 | 0.992 | 1.19 | 0.9 | 2 | 1 | 0 | 0 | 100% | 1 |
| 1GX4_UDP_A_401 | 100% | 20% | 0.046 | 0.991 | 2.39 | 1.19 | 4 | 3 | 0 | 0 | 100% | 1 |
| 5GY7_UDP_B_401 | 99% | 45% | 0.047 | 0.987 | 0.98 | 1.18 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 35% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
