UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3RUF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3RUF_UDP_B_344 | 84% | 30% | 0.092 | 0.953 | 1.16 | 1.73 | 1 | 8 | 0 | 0 | 100% | 1 |
3RUF_UDP_S_344 | 82% | 35% | 0.093 | 0.947 | 1.13 | 1.51 | 3 | 8 | 0 | 0 | 100% | 1 |
3RUF_UDP_b_343 | 75% | 38% | 0.092 | 0.924 | 0.96 | 1.55 | 1 | 8 | 0 | 0 | 100% | 1 |
3RUF_UDP_A_344 | 63% | 28% | 0.117 | 0.912 | 1.19 | 1.83 | 2 | 11 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 43% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 47% | 0.046 | 0.992 | 1.19 | 0.9 | 2 | 1 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 34% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
5GY7_UDP_B_401 | 99% | 45% | 0.047 | 0.987 | 0.98 | 1.18 | 1 | 5 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 35% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |