GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 3QOF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3QOF_GDP_D_593 | 76% | 44% | 0.132 | 0.974 | 1.06 | 1 | 2 | 3 | 4 | 0 | 100% | 1 |
| 3QOF_GDP_C_593 | 71% | 34% | 0.15 | 0.976 | 1.03 | 1.47 | 1 | 4 | 3 | 0 | 100% | 1 |
| 3QOF_GDP_B_593 | 69% | 39% | 0.139 | 0.958 | 1 | 1.29 | 2 | 5 | 2 | 0 | 100% | 1 |
| 3QOF_GDP_A_593 | 61% | 35% | 0.16 | 0.952 | 1.01 | 1.45 | 1 | 6 | 0 | 0 | 100% | 1 |
| 3Q5D_GDP_A_3850 | 96% | 38% | 0.053 | 0.972 | 0.96 | 1.37 | 2 | 6 | 1 | 0 | 100% | 1 |
| 4IDO_GDP_A_501 | 93% | 39% | 0.083 | 0.986 | 1 | 1.26 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6B9F_GDP_A_506 | 92% | 37% | 0.092 | 0.989 | 1.02 | 1.33 | 1 | 4 | 1 | 0 | 100% | 1 |
| 7OL3_GDP_A_501 | 91% | 21% | 0.088 | 0.983 | 1.14 | 2.02 | 2 | 9 | 0 | 0 | 100% | 1 |
| 4IDQ_GDP_D_501 | 89% | 37% | 0.099 | 0.984 | 1 | 1.34 | 1 | 5 | 1 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 22% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9C3K_GDP_B_201 | 100% | 38% | 0.014 | 0.998 | 1.15 | 1.18 | 1 | 3 | 0 | 0 | 100% | 1 |
| 8ECR_GDP_A_302 | 100% | 28% | 0.017 | 0.998 | 1.48 | 1.32 | 2 | 4 | 0 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 44% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3N_GDP_A_202 | 100% | 36% | 0.017 | 0.998 | 1.36 | 1.06 | 3 | 1 | 0 | 0 | 100% | 1 |
