UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3MJR designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3MJR_UDP_B_261 | 77% | 32% | 0.126 | 0.971 | 0.98 | 1.59 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3MJR_UDP_A_261 | 77% | 32% | 0.117 | 0.961 | 0.95 | 1.64 | - | 5 | 2 | 0 | 100% | 1 |
| 3MJR_UDP_D_261 | 45% | 33% | 0.133 | 0.864 | 0.91 | 1.64 | - | 5 | 1 | 0 | 100% | 1 |
| 3MJR_UDP_C_501 | 42% | 33% | 0.154 | 0.874 | 0.94 | 1.6 | - | 5 | 0 | 0 | 100% | 1 |
| 2ZIA_UDP_B_301 | 99% | 23% | 0.047 | 0.984 | 1.23 | 1.8 | 4 | 7 | 0 | 0 | 100% | 1 |
| 2ZI7_UDP_B_301 | 98% | 15% | 0.051 | 0.982 | 1.48 | 2.19 | 5 | 10 | 0 | 0 | 100% | 1 |
| 2ZI6_UDP_A_4301 | 96% | 24% | 0.071 | 0.989 | 1.16 | 1.84 | 1 | 8 | 1 | 0 | 100% | 1 |
| 7ZIA_UDP_A_301 | 95% | 28% | 0.077 | 0.988 | 1.15 | 1.65 | 3 | 6 | 0 | 0 | 100% | 1 |
| 4Q1E_UDP_B_303 | 94% | 32% | 0.078 | 0.985 | 1.14 | 1.46 | 3 | 4 | 1 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.3 | 2.73 | 13 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_B_704 | 100% | 57% | 0.03 | 0.994 | 0.59 | 0.91 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 40% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 4GYW_UDP_C_1101 | 99% | 34% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
