PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 3LY1 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3LY1_PLP_C_500 | 48% | 29% | 0.224 | 0.967 | 1.07 | 1.77 | 1 | 4 | 0 | 0 | 100% | 1 |
3LY1_PLP_B_500 | 43% | 26% | 0.244 | 0.968 | 1.21 | 1.75 | 2 | 3 | 0 | 0 | 100% | 1 |
3LY1_PLP_A_500 | 42% | 30% | 0.245 | 0.965 | 1.05 | 1.72 | 2 | 4 | 0 | 0 | 100% | 1 |
3LY1_PLP_D_500 | 36% | 21% | 0.273 | 0.971 | 1.12 | 2.18 | 1 | 7 | 0 | 0 | 100% | 1 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
9J0V_PLP_A_301 | 100% | 36% | 0.037 | 0.987 | 0.82 | 1.68 | - | 5 | 0 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |