D5M: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
D5M is a Ligand Of Interest in 3KIC designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3KIC_D5M_Q_999 | 100% | 17% | 0.017 | 0.997 | 1.5 | 2.02 | 4 | 9 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_S_999 | 100% | 16% | 0.018 | 0.997 | 1.5 | 2.03 | 4 | 9 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_B_999 | 100% | 17% | 0.018 | 0.997 | 1.49 | 2.02 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_L_999 | 100% | 17% | 0.016 | 0.996 | 1.49 | 2.01 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_I_999 | 100% | 17% | 0.018 | 0.997 | 1.5 | 2.02 | 4 | 9 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_A_999 | 100% | 17% | 0.021 | 0.998 | 1.5 | 2.02 | 4 | 9 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_C_999 | 100% | 17% | 0.018 | 0.996 | 1.49 | 2.01 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_T_999 | 100% | 17% | 0.019 | 0.996 | 1.49 | 2.02 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_M_999 | 100% | 16% | 0.019 | 0.996 | 1.5 | 2.03 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_F_999 | 100% | 16% | 0.02 | 0.996 | 1.5 | 2.03 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_P_999 | 100% | 17% | 0.02 | 0.996 | 1.5 | 2.01 | 4 | 9 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_N_999 | 100% | 17% | 0.019 | 0.994 | 1.5 | 2.02 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_H_999 | 100% | 17% | 0.021 | 0.996 | 1.5 | 2.01 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_D_999 | 100% | 16% | 0.021 | 0.995 | 1.51 | 2.02 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_R_999 | 100% | 16% | 0.022 | 0.996 | 1.5 | 2.03 | 4 | 9 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_O_999 | 100% | 17% | 0.02 | 0.994 | 1.49 | 2.01 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_J_999 | 100% | 17% | 0.021 | 0.996 | 1.5 | 2.02 | 4 | 9 | 1 | 0 | 100% | 0.7 |
| 3KIC_D5M_K_999 | 100% | 17% | 0.022 | 0.995 | 1.49 | 2.02 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_E_999 | 100% | 17% | 0.024 | 0.994 | 1.5 | 2.02 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIC_D5M_G_999 | 100% | 16% | 0.024 | 0.994 | 1.5 | 2.03 | 4 | 9 | 2 | 0 | 100% | 0.7 |
| 3KIE_D5M_T_999 | 97% | 18% | 0.055 | 0.976 | 1.5 | 1.95 | 4 | 7 | 3 | 0 | 100% | 0.73 |
| 2IOC_D5M_B_303 | 99% | 7% | 0.037 | 0.987 | 2.92 | 1.85 | 7 | 8 | 2 | 0 | 100% | 1 |
| 6B42_D5M_A_201 | 99% | 25% | 0.04 | 0.987 | 1.33 | 1.62 | 4 | 7 | 0 | 0 | 100% | 1 |
| 24BS_D5M_A_401 | 99% | 70% | 0.043 | 0.982 | 0.57 | 0.44 | - | - | 0 | 0 | 100% | 1 |
| 2PAU_D5M_B_301 | 99% | 20% | 0.043 | 0.982 | 1.11 | 2.11 | 2 | 11 | 0 | 0 | 100% | 0.9 |
| 8HCG_D5M_A_306 | 98% | 15% | 0.048 | 0.983 | 1.99 | 1.66 | 8 | 3 | 0 | 0 | 100% | 1 |














