UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3IOJ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3IOJ_UDP_B_475 | 99% | 29% | 0.038 | 0.987 | 1.07 | 1.64 | 2 | 8 | 0 | 0 | 100% | 1 |
| 3IOJ_UDP_A_475 | 99% | 30% | 0.041 | 0.985 | 1.09 | 1.61 | 2 | 6 | 1 | 0 | 100% | 1 |
| 5M7C_UDP_B_602 | 100% | 30% | 0.018 | 0.997 | 1.2 | 1.49 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6GX2_UDP_A_402 | 100% | 49% | 0.034 | 0.993 | 0.85 | 1.01 | - | 2 | 0 | 0 | 100% | 1 |
| 4C2S_UDP_A_475 | 99% | 29% | 0.037 | 0.99 | 1.21 | 1.53 | 4 | 7 | 0 | 0 | 100% | 1 |
| 5M7B_UDP_A_602 | 99% | 35% | 0.038 | 0.987 | 1.25 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 2Y7A_UDP_A_1347 | 99% | 32% | 0.039 | 0.985 | 1.03 | 1.56 | 1 | 6 | 0 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
