CDP: CYTIDINE-5'-DIPHOSPHATE
CDP is a Ligand Of Interest in 3GPA designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 3GPA_CDP_C_201 | 83% | 57% | 0.117 | 0.982 | 0.76 | 0.75 | 1 | - | 1 | 0 | 100% | 1 |
| 3GPA_CDP_B_201 | 83% | 54% | 0.112 | 0.976 | 0.81 | 0.82 | - | - | 4 | 0 | 100% | 1 |
| 3GPA_CDP_E_201 | 82% | 56% | 0.108 | 0.969 | 0.77 | 0.79 | - | - | 1 | 0 | 100% | 1 |
| 3GPA_CDP_D_201 | 75% | 53% | 0.128 | 0.968 | 0.83 | 0.86 | - | - | 1 | 0 | 100% | 1 |
| 3GPA_CDP_A_201 | 75% | 44% | 0.131 | 0.969 | 0.83 | 1.24 | 1 | 2 | 8 | 0 | 100% | 1 |
| 3GPA_CDP_F_201 | 68% | 47% | 0.138 | 0.953 | 0.81 | 1.12 | - | 3 | 8 | 0 | 100% | 1 |
| 3EE3_CDP_C_162 | 95% | 40% | 0.054 | 0.967 | 1.26 | 0.97 | 2 | 2 | 1 | 0 | 100% | 1 |
| 6SDK_CDP_C_301 | 99% | 5% | 0.043 | 0.987 | 3.72 | 1.58 | 12 | 6 | 0 | 0 | 100% | 1 |
| 3BOS_CDP_B_300 | 99% | 52% | 0.046 | 0.988 | 0.92 | 0.81 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8VHP_CDP_D_809 | 97% | 49% | 0.051 | 0.975 | 0.89 | 0.96 | - | 2 | 2 | 0 | 100% | 1 |
| 9LJR_CDP_A_601 | 96% | 6% | 0.061 | 0.976 | 4.11 | 1.06 | 16 | 3 | 0 | 0 | 100% | 1 |
| 1ORR_CDP_B_1301 | 95% | 32% | 0.06 | 0.97 | 1.28 | 1.32 | 3 | 6 | 0 | 0 | 100% | 1 |