Ligand validation:3GDT

UP6: 6-AZA URIDINE 5'-MONOPHOSPHATE

UP6 is a Ligand Of Interest in 3GDT designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3GDT_UP6_A_301	91%	19%	0.077	0.963	1.41	2.19	2	3	0	0	100%	1
3GDT_UP6_B_301	75%	18%	0.107	0.94	1.47	2.2	2	2	0	0	100%	1
3GDT_UP6_D_301	15%	18%	0.272	0.832	1.5	2.2	2	3	0	0	100%	1
3GDT_UP6_C_301	12%	17%	0.315	0.845	1.48	2.28	2	2	0	0	100%	1
3GDL_UP6_B_301	92%	18%	0.079	0.97	1.4	2.3	2	3	0	0	100%	1
6ZX1_UP6_A_501	100%	4%	0.051	0.993	3.01	2.89	7	7	0	0	100%	1
1DVJ_UP6_B_5002	98%	4%	0.062	0.986	3.05	2.94	6	4	0	0	100%	1
4NX5_UP6_A_301	97%	36%	0.064	0.98	1.34	1.26	2	2	0	0	100%	1
3G24_UP6_A_229	97%	21%	0.071	0.986	1.35	2.14	2	2	1	0	100%	1
3PBV_UP6_A_229	95%	35%	0.078	0.984	1.42	1.25	2	1	1	0	100%	0.961

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.