UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3DXH designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 3DXH_UDP_A_126 | 49% | 27% | 0.126 | 0.873 | 1.03 | 1.81 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3DXH_UDP_B_125 | 47% | 34% | 0.125 | 0.861 | 1.03 | 1.48 | 2 | 4 | 0 | 0 | 100% | 1 |
| 3DXH_UDP_B_126 | 30% | 32% | 0.144 | 0.806 | 1.06 | 1.52 | 2 | 5 | 0 | 0 | 100% | 1 |
| 3DXH_UDP_A_125 | 28% | 40% | 0.15 | 0.801 | 0.96 | 1.27 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |