CVM: CYMAL-4
CVM is a Ligand Of Interest in 2XQU designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2XQU_CVM_E_103 | 19% | 70% | 0.113 | 0.919 | 0.23 | 0.75 | - | - | 0 | 0 | 21% | 1 |
| 2XQU_CVM_C_106 | 18% | 88% | 0.114 | 0.922 | 0.36 | 0.26 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_B_108 | 18% | 73% | 0.124 | 0.931 | 0.22 | 0.68 | - | - | 2 | 0 | 21% | 1 |
| 2XQU_CVM_A_110 | 15% | 89% | 0.123 | 0.915 | 0.33 | 0.27 | - | - | 1 | 0 | 18% | 1 |
| 2XQU_CVM_D_106 | 14% | 91% | 0.131 | 0.921 | 0.33 | 0.21 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_C_103 | 13% | 87% | 0.126 | 0.901 | 0.35 | 0.3 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_C_110 | 13% | 89% | 0.136 | 0.917 | 0.33 | 0.26 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_A_104 | 13% | 80% | 0.14 | 0.916 | 0.26 | 0.51 | - | - | 0 | 0 | 21% | 1 |
| 2XQU_CVM_B_107 | 13% | 71% | 0.134 | 0.904 | 0.29 | 0.67 | - | - | 2 | 0 | 21% | 1 |
| 2XQU_CVM_E_106 | 13% | 89% | 0.149 | 0.934 | 0.34 | 0.24 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_C_107 | 12% | 72% | 0.131 | 0.896 | 0.27 | 0.67 | - | - | 0 | 0 | 21% | 1 |
| 2XQU_CVM_E_104 | 11% | 68% | 0.144 | 0.907 | 0.25 | 0.78 | - | - | 1 | 0 | 21% | 1 |
| 2XQU_CVM_E_110 | 11% | 91% | 0.146 | 0.91 | 0.32 | 0.21 | - | - | 3 | 0 | 18% | 1 |
| 2XQU_CVM_B_104 | 10% | 91% | 0.154 | 0.92 | 0.32 | 0.22 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_D_108 | 10% | 78% | 0.132 | 0.873 | 0.24 | 0.57 | - | - | 0 | 0 | 21% | 1 |
| 2XQU_CVM_A_106 | 10% | 89% | 0.151 | 0.905 | 0.35 | 0.25 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_D_107 | 9% | 76% | 0.173 | 0.927 | 0.23 | 0.61 | - | - | 0 | 0 | 21% | 1 |
| 2XQU_CVM_D_104 | 9% | 69% | 0.135 | 0.859 | 0.22 | 0.8 | - | - | 1 | 0 | 21% | 1 |
| 2XQU_CVM_C_104 | 9% | 77% | 0.139 | 0.865 | 0.23 | 0.59 | - | - | 0 | 0 | 21% | 1 |
| 2XQU_CVM_B_103 | 8% | 75% | 0.17 | 0.913 | 0.19 | 0.67 | - | - | 0 | 0 | 21% | 1 |
| 2XQU_CVM_D_102 | 8% | 54% | 0.189 | 0.754 | 0.48 | 1.11 | - | 4 | 10 | 0 | 100% | 1 |
| 2XQU_CVM_D_110 | 8% | 91% | 0.154 | 0.882 | 0.3 | 0.22 | - | - | 2 | 0 | 18% | 1 |
| 2XQU_CVM_B_109 | 7% | 71% | 0.154 | 0.859 | 0.22 | 0.72 | - | - | 2 | 0 | 24% | 1 |
| 2XQU_CVM_E_102 | 7% | 65% | 0.213 | 0.776 | 0.42 | 0.72 | - | - | 5 | 0 | 100% | 1 |
| 2XQU_CVM_E_107 | 7% | 79% | 0.17 | 0.887 | 0.26 | 0.53 | - | - | 3 | 0 | 21% | 1 |
| 2XQU_CVM_A_103 | 6% | 89% | 0.171 | 0.889 | 0.32 | 0.27 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_B_106 | 5% | 90% | 0.183 | 0.878 | 0.33 | 0.23 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_A_107 | 5% | 78% | 0.194 | 0.889 | 0.2 | 0.6 | - | - | 1 | 0 | 21% | 1 |
| 2XQU_CVM_B_110 | 5% | 87% | 0.18 | 0.866 | 0.32 | 0.32 | - | - | 0 | 0 | 18% | 1 |
| 2XQU_CVM_D_103 | 4% | 80% | 0.197 | 0.859 | 0.19 | 0.58 | - | - | 0 | 0 | 24% | 1 |
| 2XQU_CVM_A_102 | 3% | 56% | 0.212 | 0.685 | 0.45 | 1.06 | - | 2 | 4 | 0 | 100% | 1 |
| 2XQU_CVM_B_102 | 3% | 60% | 0.235 | 0.704 | 0.45 | 0.89 | - | - | 5 | 0 | 100% | 1 |
| 2XQU_CVM_D_109 | 2% | 73% | 0.19 | 0.778 | 0.22 | 0.69 | - | - | 1 | 0 | 30% | 1 |
| 2XQU_CVM_A_108 | 2% | 73% | 0.223 | 0.797 | 0.23 | 0.68 | - | - | 1 | 0 | 30% | 1 |
| 2XQU_CVM_C_108 | 1% | 74% | 0.215 | 0.762 | 0.24 | 0.65 | - | - | 0 | 0 | 21% | 1 |
| 2XQU_CVM_C_102 | 1% | 64% | 0.261 | 0.653 | 0.47 | 0.71 | - | 1 | 5 | 0 | 100% | 1 |
| 2XQU_CVM_E_109 | 1% | 79% | 0.221 | 0.739 | 0.23 | 0.56 | - | - | 1 | 0 | 24% | 1 |
| 2XQU_CVM_E_108 | 1% | 74% | 0.242 | 0.769 | 0.23 | 0.65 | - | - | 1 | 0 | 21% | 1 |
| 2XQU_CVM_A_109 | 1% | 77% | 0.253 | 0.757 | 0.22 | 0.6 | - | - | 1 | 0 | 24% | 1 |
| 2XQU_CVM_D_113 | 1% | 76% | 0.246 | 0.725 | 0.21 | 0.63 | - | - | 1 | 0 | 30% | 1 |
| 2XQU_CVM_B_113 | 0% | 83% | 0.262 | 0.669 | 0.23 | 0.5 | - | - | 1 | 0 | 30% | 1 |
| 2XQU_CVM_E_113 | 0% | 77% | 0.296 | 0.684 | 0.23 | 0.59 | - | - | 0 | 0 | 30% | 1 |
| 2XQU_CVM_C_109 | 0% | 75% | 0.37 | 0.784 | 0.22 | 0.64 | - | - | 0 | 0 | 30% | 0.5 |
| 2XQU_CVM_D_111 | 0% | 81% | 0.268 | 0.608 | 0.21 | 0.54 | - | - | 2 | 0 | 30% | 1 |
| 2XQU_CVM_C_113 | 0% | 83% | 0.288 | 0.588 | 0.22 | 0.51 | - | - | 2 | 0 | 30% | 1 |
| 2XQU_CVM_B_111 | 0% | 75% | 0.299 | 0.553 | 0.22 | 0.63 | - | - | 5 | 0 | 30% | 1 |
| 2XQU_CVM_B_112 | 0% | 83% | 0.334 | 0.586 | 0.23 | 0.49 | - | - | 1 | 0 | 30% | 1 |
| 2XQU_CVM_D_112 | 0% | 76% | 0.333 | 0.577 | 0.21 | 0.62 | - | - | 2 | 0 | 30% | 1 |
| 2XQU_CVM_E_112 | 0% | 77% | 0.311 | 0.524 | 0.23 | 0.6 | - | - | 2 | 0 | 30% | 1 |
| 2XQU_CVM_A_113 | 0% | 83% | 0.362 | 0.572 | 0.21 | 0.51 | - | - | 3 | 0 | 30% | 1 |
| 2XQU_CVM_C_112 | 0% | 81% | 0.324 | 0.509 | 0.21 | 0.54 | - | - | 2 | 0 | 30% | 1 |
| 2XQU_CVM_A_111 | 0% | 83% | 0.353 | 0.495 | 0.22 | 0.5 | - | - | 2 | 0 | 30% | 0.53 |
| 2XQU_CVM_A_112 | 0% | 83% | 0.388 | 0.46 | 0.21 | 0.51 | - | - | 0 | 0 | 30% | 1 |
| 2XQU_CVM_C_111 | 0% | 84% | 0.47 | 0.482 | 0.22 | 0.49 | - | - | 2 | 0 | 30% | 0.5 |
| 2XQU_CVM_E_111 | 0% | 74% | 0.444 | 0.396 | 0.23 | 0.66 | - | - | 1 | 0 | 30% | 0.5 |
| 2XQS_CVM_E_106 | 24% | 91% | 0.114 | 0.962 | 0.37 | 0.17 | - | - | 1 | 0 | 18% | 1 |
| 2XQT_CVM_A_1085 | 23% | 87% | 0.115 | 0.956 | 0.27 | 0.36 | - | - | 1 | 0 | 18% | 1 |
| 2WIE_CVM_D_106 | 14% | 91% | 0.138 | 0.926 | 0.32 | 0.22 | - | - | 0 | 0 | 18% | 1 |
| 4IUQ_CVM_B_302 | 21% | 16% | 0.154 | 0.819 | 1.24 | 2.33 | 5 | 20 | 21 | 0 | 100% | 1 |
| 4IUP_CVM_A_303 | 20% | 47% | 0.137 | 0.863 | 0.98 | 0.99 | 1 | 2 | 1 | 0 | 67% | 1 |
| 4IUR_CVM_B_302 | 19% | 61% | 0.151 | 0.874 | 0.42 | 0.86 | - | 1 | 3 | 0 | 67% | 1 |














