Ligand validation:2VDP

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2VDP_NAG_A_3015	6%	62%	0.214	0.668	0.52	0.77	-	-	0	0	100%	0.7
2VDP_NAG_B_3099	3%	46%	0.184	0.552	0.73	1.24	-	2	0	1	100%	1
2VDP_NAG_A_3249	1%	52%	0.203	0.348	0.56	1.14	-	1	0	0	100%	0.7
4Z7Q_NAG_D_503	49%	69%	0.095	0.839	0.54	0.5	-	-	0	0	100%	1
5HDB_NAG_B_2003	40%	82%	0.115	0.822	0.3	0.44	-	-	0	0	100%	1
7THO_NAG_B_2004	36%	47%	0.094	0.781	1.08	0.88	2	-	0	0	100%	1
7UDG_NAG_D_2003	34%	66%	0.098	0.777	0.42	0.71	-	1	0	0	100%	1
7UJE_NAG_B_2004	33%	73%	0.115	0.792	0.39	0.52	-	-	0	0	100%	1
5LDS_NAG_C_1003	100%	65%	0.016	0.997	0.55	0.64	-	-	3	0	100%	1
3H0C_NAG_A_796	100%	55%	0.02	0.995	0.47	1.12	-	1	0	0	100%	1
5O5D_NAG_B_501	100%	60%	0.02	0.995	0.38	0.97	-	1	0	0	100%	1
9OAR_NAG_C_202	100%	52%	0.021	0.994	0.68	1.06	-	1	0	0	100%	1
6MUG_NAG_G_629	100%	72%	0.022	0.994	0.35	0.58	-	-	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 2VDP | pdb_00002vdp